bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: CIR1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
CIR1 0 -0.911 0.100 -0.530

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
CIR1 Phosphorylation S202 -0.296 -0.615 _NLTANDPSQEYVAS(ph)EGEEDPEVEFLK_

Background Information for CIR1:


Pubmed-CIR1 »
Uniprot-CIR1 »
Biogrid-CIR1 »
ProteomicsDB-CIR1 »

Tumorportal-CIR1 »
COSMIC-CIR1 »
GenomeRNAi-CIR1 »
Genecards-CIR1


Protein-protein Interactions for CIR1
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait EIF2C3 Cat. description Hein, Mann, Cell 2015
Category members IP bait FANCI Cat. description Hein, Mann, Cell 2015
Category members IP bait CIR1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in CIR1
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Znf_CCHC IPR001878 1.51


Protein complexes (CORUM database) featuring CIR1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring CIR1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members GO Category GO:0008380 RNA splicing Database 10.77
Category members GO Category GO:0016607 nuclear speck Database 4.84
Category members GO Category GO:0006397 mRNA processing Database 3.76
Category members GO Category GO:0045892 negative regulation of transcription, DNA-dependent Database 1.15
Category members GO Category GO:0003676 nucleic acid binding Database 0.83
Category members GO Category GO:0003700 sequence-specific DNA binding transcription factor activity Database 0.63
Category members GO Category GO:0005815 microtubule organizing center Database 0.39
Category members GO Category GO:0008270 zinc ion binding Database 0.29
Category members Pathway Pathway_892 KEGG_NOTCH_SIGNALING_PATHWAY 0 0
Category members GO Category GO:0000118 histone deacetylase complex Database 0
Category members GO Category GO:0003705 RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity Database 0
Category members GO Category GO:0003714 transcription corepressor activity Database 0


.

© Copyright Svejstrup Laboratory 2015