bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: APOC1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
APOC1 0 2.227 -0.540 1.560

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
APOC1 Ubiquitylation K47 0.667 _EFGNTLEDK(gl)AR_
APOC1 Ubiquitylation K56 0.405 _IK(gl)QSELSAK_
APOC1 Ubiquitylation K63 -0.252 _IKQSELSAK(gl)MR_

Background Information for APOC1:


Pubmed-APOC1 »
Uniprot-APOC1 »
Biogrid-APOC1 »
ProteomicsDB-APOC1 »

Tumorportal-APOC1 »
COSMIC-APOC1 »
GenomeRNAi-APOC1 »
Genecards-APOC1


Protein-protein Interactions for APOC1
Show screen data for Category Name and Description Link to cat description Data Source


Protein Domains in APOC1
Domain name Domain Description TC-NER relevance -log10(p-value)


Protein complexes (CORUM database) featuring APOC1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring APOC1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005576 extracellular region Database 10.9
Category members GO Category GO:0005783 endoplasmic reticulum Database 0.62
Category members GO Category GO:0004859 phospholipase inhibitor activity Database 0.23
Category members GO Category GO:0008203 cholesterol metabolic process Database 0.08
Category members GO Category GO:0045717 negative regulation of fatty acid biosynthetic process Database 0.02
Category members GO Category GO:0005504 fatty acid binding Database 0
Category members GO Category GO:0006629 lipid metabolic process Database 0
Category members GO Category GO:0006641 triglyceride metabolic process Database 0
Category members GO Category GO:0010873 positive regulation of cholesterol esterification Database 0
Category members GO Category GO:0010916 negative regulation of very-low-density lipoprotein particle clearance Database 0
Category members GO Category GO:0031210 phosphatidylcholine binding Database 0
Category members GO Category GO:0032374 regulation of cholesterol transport Database 0
Category members GO Category GO:0032375 negative regulation of cholesterol transport Database 0
Category members GO Category GO:0033344 cholesterol efflux Database 0
Category members GO Category GO:0033700 phospholipid efflux Database 0
Category members GO Category GO:0034361 very-low-density lipoprotein particle Database 0
Category members GO Category GO:0034364 high-density lipoprotein particle Database 0
Category members GO Category GO:0034375 high-density lipoprotein particle remodeling Database 0
Category members GO Category GO:0034379 very-low-density lipoprotein particle assembly Database 0
Category members GO Category GO:0034382 chylomicron remnant clearance Database 0
Category members GO Category GO:0034447 very-low-density lipoprotein particle clearance Database 0
Category members GO Category GO:0042157 lipoprotein metabolic process Database 0
Category members GO Category GO:0042627 chylomicron Database 0
Category members GO Category GO:0045833 negative regulation of lipid metabolic process Database 0
Category members GO Category GO:0048261 negative regulation of receptor-mediated endocytosis Database 0
Category members GO Category GO:0050995 negative regulation of lipid catabolic process Database 0
Category members GO Category GO:0051005 negative regulation of lipoprotein lipase activity Database 0
Category members GO Category GO:0055102 lipase inhibitor activity Database 0
Category members GO Category GO:0060228 phosphatidylcholine-sterol O-acyltransferase activator activity Database 0


.

© Copyright Svejstrup Laboratory 2015