RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
ATG2B	1	-0.250	-0.100
RB1CC1	0	-0.320	0.680
RB1CC1	0	-0.320	0.680		-1.155	-0.488
ATG16L1	0	0.400	-0.280
ATG2A	0	-0.120	-0.210	-0.082
ATG12	0	-0.150	1.370
WIPI2	0	0.250	-0.250
ULK1	0	0.740	-0.520

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ATG12	Ubiquitylation	K116		0.431	_AVGDTPIMK(gl)TK_
ATG12	Ubiquitylation	K118		0.431	_AVGDTPIMK(gl)TK_
ATG16L1	Phosphorylation	S304	-0.317	-1.220	_S(ph)VSSFPVPQDNVDTHPGSGK_
ATG2B	Phosphorylation	S239	-0.423	-0.513	_S(ph)SPVCSTAPVETEPK_
ATG2B	Phosphorylation	S240	-0.423	-0.513	_S(ph)SPVCSTAPVETEPK_
ATG2B	Phosphorylation	S497	1.523	0.570	_SVS(ph)VDESRPELIFR_
ATG2B	Phosphorylation	S1579	-0.595	0.128	_SYIS(ph)PHSSPSHTPTR_
RB1CC1	Phosphorylation	S222	0.084	0.562	_LDS(ph)LPEHEDSEK_
RB1CC1	Phosphorylation	S237	-0.464	-0.874	_S(ph)TELVLSPDM(ox)PR_
RB1CC1	Phosphorylation	T238	-0.376	-0.874	_S(ph)TELVLSPDM(ox)PR_
RB1CC1	Phosphorylation	S257	-0.819		_TTNESLLTS(ph)FPK_
RB1CC1	Phosphorylation	S266		0.766	_SVEHVS(ph)PDTADAESGK_
RB1CC1	Phosphorylation	S624	-0.685	-0.445	_AAQS(ph)LDEM(ox)SQTITDLLSEQK_
ULK1	Phosphorylation	S450	-0.237	-0.173	_NLQS(ph)PTQFQTPR_
ULK1	Phosphorylation	T468	-0.247	0.456	_SGST(ph)SPLGFAR_
ULK1	Phosphorylation	S469	0.035	0.470	_SGSTS(ph)PLGFAR_
ULK1	Phosphorylation	S623	-0.793	-0.874	_NPLPPILGS(ph)PTK_
ULK1	Phosphorylation	T625	-0.547	-0.776	_NPLPPILGSPT(ph)K_
ULK1	Phosphorylation	T636		0.087	_T(ph)PSSQNLLALLAR_
ULK1	Phosphorylation	S638	-0.154	0.598	_TPS(ph)SQNLLALLAR_
WIPI2	Ubiquitylation	K223		-1.289	_LATASEK(gl)GTVIR_
WIPI2	Ubiquitylation	K341		-0.847	_NICSLATIQK(gl)IPR_
WIPI2	Phosphorylation	S413	0.225	0.402	_GTYVPSS(ph)PTR_
WIPI2	Phosphorylation	T415	0.157		_GTYVPSSPT(ph)R_