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Query: VAMP4

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
VAMP4 0 2.019 0.540 -0.460

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
VAMP4 Ubiquitylation K19 0.300 0.708 _HLNDDDVTGSVK(gl)SER_
VAMP4 Phosphorylation S30 0.418 0.593 _NLLEDDS(ph)DEEEDFFLR_
VAMP4 Ubiquitylation K87 -0.399 _LDELQDK(gl)SESLSDNATAFSNR_

Background Information for VAMP4:


Pubmed-VAMP4 »
Uniprot-VAMP4 »
Biogrid-VAMP4 »
ProteomicsDB-VAMP4 »

Tumorportal-VAMP4 »
COSMIC-VAMP4 »
GenomeRNAi-VAMP4 »
Genecards-VAMP4


Protein-protein Interactions for VAMP4
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait ANAPC13 Cat. description Hein, Mann, Cell 2015
Category members IP bait PLK1 Cat. description Hein, Mann, Cell 2015
Category members IP bait TAF15 Cat. description Hein, Mann, Cell 2015
Category members IP bait ZNF526 Cat. description Hein, Mann, Cell 2015
Category members IP bait CLEC12A Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait STX11 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait STX3 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait VAMP4 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in VAMP4
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Synaptobrevin IPR001388 0


Protein complexes (CORUM database) featuring VAMP4
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 874 SNARE complex (VAMP3, VAMP4, VAMP8, STX6) Database 0.62
Category members Corum 875 SNARE complex (VAMP3, VAMP4, STX16) Database 0
Category members Corum 877 SNARE complex (VAMP4, STX6, STX16, VTI1a, VTI1b) Database 0


Categories featuring VAMP4
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0016021 integral to membrane Database 7.67
Category members Pathway Pathway_1261 KEGG_SNARE_INTERACTIONS_IN_VESICULAR_TRANSPORT 0 1.52
Category members GO Category GO:0016192 vesicle-mediated transport Database 1.1
Category members GO Category GO:0031201 SNARE complex Database 0.49
Category members GO Category GO:0043001 Golgi to plasma membrane protein transport Database 0.32
Category members GO Category GO:0005768 endosome Database 0.29
Category members GO Category GO:0005794 Golgi apparatus Database 0.27
Category members GO Category GO:0005802 trans-Golgi network Database 0.13
Category members GO Category GO:0000139 Golgi membrane Database 0
Category members GO Category GO:0005764 lysosome Database 0


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