bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: TRMT2A

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
TRMT2A 0 1.003 -0.670 0.960

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
TRMT2A Phosphorylation S378 0.953 _KTPS(ph)QEGLPLEHVAGDR_
TRMT2A Ubiquitylation K147 -0.910 _PK(gl)ADPMAR_

Background Information for TRMT2A:


Pubmed-TRMT2A »
Uniprot-TRMT2A »
Biogrid-TRMT2A »
ProteomicsDB-TRMT2A »

Tumorportal-TRMT2A »
COSMIC-TRMT2A »
GenomeRNAi-TRMT2A »
Genecards-TRMT2A


Protein-protein Interactions for TRMT2A
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait TRMT2A Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in TRMT2A
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members RRM_dom IPR000504 4.34
Category members Methyltransf_11 IPR013216 0.2
Category members RNA_methylase_dom IPR000241 0.08
Category members SAM-dependent_MTases-like IPR029063 0.04
Category members Small_mtfrase_dom IPR007848 0.01
Category members PCMT IPR000682 0
Category members tRNA_(Gua-N-7)_MeTrfase IPR003358 0
Category members UbiE/COQ5_MeTrFase IPR004033 0
Category members RNA_MeTrfase_RsmD IPR004398 0
Category members U5_MeTrfase_fam IPR010280 0


Protein complexes (CORUM database) featuring TRMT2A
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring TRMT2A
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0003723 RNA binding Database INF
Category members GO Category GO:0000166 nucleotide binding Database 5.91
Category members GO Category GO:0003676 nucleic acid binding Database 0.83
Category members GO Category GO:0006400 tRNA modification Database 0.25
Category members GO Category GO:0008173 RNA methyltransferase activity Database 0.18
Category members GO Category GO:0006396 RNA processing Database 0.17
Category members GO Category GO:0031167 rRNA methylation Database 0.05
Category members GO Category GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity Database 0
Category members GO Category GO:0006464 cellular protein modification process Database 0
Category members GO Category GO:0008152 metabolic process Database 0
Category members GO Category GO:0008168 methyltransferase activity Database 0
Category members GO Category GO:0008176 tRNA (guanine-N7-)-methyltransferase activity Database 0


.

© Copyright Svejstrup Laboratory 2015