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Query: SYNJ2

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
SYNJ2 0 -1.184 -0.210 0.240

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
SYNJ2 Phosphorylation S1122 0.799 _KS(ph)ASDASISSGTHGQYSILQTAR_
SYNJ2 Phosphorylation S504 -0.637 -0.517 _GGM(ox)LLDS(ph)TALLVTPR_
SYNJ2 Ubiquitylation K5 -1.586 _(ac)ALSK(gl)GLR_

Background Information for SYNJ2:


Pubmed-SYNJ2 »
Uniprot-SYNJ2 »
Biogrid-SYNJ2 »
ProteomicsDB-SYNJ2 »

Tumorportal-SYNJ2 »
COSMIC-SYNJ2 »
GenomeRNAi-SYNJ2 »
Genecards-SYNJ2


Protein-protein Interactions for SYNJ2
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait SH3KBP1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in SYNJ2
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members RRM_dom IPR000504 4.34
Category members Syja_N IPR002013 0.18
Category members IPPc IPR000300 0.1
Category members Endo/exonuclease/phosphatase IPR005135 0
Category members DUF1866 IPR015047 0


Protein complexes (CORUM database) featuring SYNJ2
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring SYNJ2
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0003723 RNA binding Database INF
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005829 cytosol Database INF
Category members GO Category GO:0000166 nucleotide binding Database 5.91
Category members DDR Literature pubmedid:19647519 Paulsen et al., 2009 siRNA screen for g-H2A.x phosphorylation 3.6
Category members GO Category GO:0003676 nucleic acid binding Database 0.83
Category members GO Category GO:0016020 membrane Database 0.52
Category members GO Category GO:0046856 phosphatidylinositol dephosphorylation Database 0.35
Category members GO Category GO:0044281 small molecule metabolic process Database 0.35
Category members GO Category GO:0042578 phosphoric ester hydrolase activity Database 0.31
Category members Pathway Pathway_106 KEGG_INOSITOL_PHOSPHATE_METABOLISM 0 0.28
Category members GO Category GO:0004439 phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity Database 0.23
Category members Pathway Pathway_297 BIOCARTA_NDKDYNAMIN_PATHWAY 0 0.08
Category members GO Category GO:0006661 phosphatidylinositol biosynthetic process Database 0.06
Category members Pathway Pathway_103 REACTOME_PI_METABOLISM 0 0.04
Category members Pathway Pathway_100 REACTOME_PHOSPHOLIPID_METABOLISM 0 0
Category members Pathway Pathway_102 REACTOME_SYNTHESIS_OF_PIPS_AT_THE_PLASMA_MEMBRANE 0 0
Category members Pathway Pathway_4 REACTOME_METABOLISM_OF_LIPIDS_AND_LIPOPROTEINS 0 0
Category members Pathway Pathway_488 KEGG_PHOSPHATIDYLINOSITOL_SIGNALING_SYSTEM 0 0
Category members GO Category GO:0006644 phospholipid metabolic process Database 0


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