bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: SNRPA

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
SNRPA 1 2.683 0.000 -0.170
SNRPA 1 2.683 0.000 -0.170 0.138 -0.742 0.266

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
SNRPA Ubiquitylation K96 0.956 0.541 _TDSDIIAK(gl)MK_
SNRPA Ubiquitylation K88 1.977 -0.029 _IQYAK(gl)TDSDIIAK_
SNRPA Ubiquitylation K98 2.004 _MK(gl)GTFVER_

Background Information for SNRPA:


Pubmed-SNRPA »
Uniprot-SNRPA »
Biogrid-SNRPA »
ProteomicsDB-SNRPA »

Tumorportal-SNRPA »
COSMIC-SNRPA »
GenomeRNAi-SNRPA »
Genecards-SNRPA


Protein-protein Interactions for SNRPA
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait MATR3 Cat. description Hein, Mann, Cell 2015
Category members IP bait RNPS1 Cat. description Hein, Mann, Cell 2015
Category members IP bait SNRNP70 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SNRPE Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SNRPF Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SNRPG Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SNRPN Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in SNRPA
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members RRM_dom IPR000504 4.34


Protein complexes (CORUM database) featuring SNRPA
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 351 Spliceosome Database 9.3
Category members Corum 1183 CDC5L complex Database 2.07
Category members Corum 1751 SMN complex Database 0.37
Category members Corum 1148 snRNP-free U1A (SF-A) complex Database 0.05
Category members Corum 1745 SMN complex Database 0


Categories featuring SNRPA
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0003723 RNA binding Database INF
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005654 nucleoplasm Database INF
Category members GO Category GO:0010467 gene expression Database INF
Category members Pathway Pathway_373 REACTOME_MRNA_PROCESSING 0 12.92
Category members Pathway Pathway_380 REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA 0 12.24
Category members GO Category GO:0008380 RNA splicing Database 10.77
Category members Pathway Pathway_851 KEGG_SPLICEOSOME 0 7.94
Category members GO Category GO:0000398 mRNA splicing, via spliceosome Database 7.06
Category members Pathway Pathway_377 REACTOME_MRNA_SPLICING 0 6.99
Category members GO Category GO:0000166 nucleotide binding Database 5.91
Category members GO Category GO:0005681 spliceosomal complex Database 3.88
Category members GO Category GO:0017069 snRNA binding Database 0.96
Category members GO Category GO:0003676 nucleic acid binding Database 0.83


.

© Copyright Svejstrup Laboratory 2015