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Query: SNF8

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
SNF8 0 -0.729 1.120 -0.560

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
SNF8 Ubiquitylation K14 -1.326 _GVGAGAIAKK(gl)_
SNF8 Ubiquitylation K134 0.597 _GK(gl)FAQDVSQDDLIR_

Background Information for SNF8:


Pubmed-SNF8 »
Uniprot-SNF8 »
Biogrid-SNF8 »
ProteomicsDB-SNF8 »

Tumorportal-SNF8 »
COSMIC-SNF8 »
GenomeRNAi-SNF8 »
Genecards-SNF8


Protein-protein Interactions for SNF8
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait SNF8 Cat. description Hein, Mann, Cell 2015
Category members IP bait VPS25 Cat. description Hein, Mann, Cell 2015
Category members IP bait VPS36 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in SNF8
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members EAP30 IPR007286 0


Protein complexes (CORUM database) featuring SNF8
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 1187 ESCRT-II complex Database 0


Categories featuring SNF8
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005829 cytosol Database INF
Category members GO Category GO:0015031 protein transport Database 3.48
Category members Pathway Pathway_666 KEGG_ENDOCYTOSIS 0 1.25
Category members Pathway Pathway_474 REACTOME_MEMBRANE_TRAFFICKING 0 1.14
Category members GO Category GO:0006351 transcription, DNA-templated Database 1.07
Category members GO Category GO:0016197 endosomal transport Database 0.43
Category members GO Category GO:0008134 transcription factor binding Database 0.37
Category members GO Category GO:0005667 transcription factor complex Database 0.19
Category members GO Category GO:0006357 regulation of transcription from RNA polymerase II promoter Database 0.19
Category members Pathway Pathway_800 REACTOME_ENDOSOMAL_SORTING_COMPLEX_REQUIRED_FOR_TRANSPORT_ESCRT 0 0.06
Category members GO Category GO:0031902 late endosome membrane Database 0


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