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Query: SMG9

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
SMG9 0 0.864 0.330 -0.540

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
SMG9 Phosphorylation S4 0.589 _(ac)SES(ph)GHSQPGLYGIER_
SMG9 Phosphorylation S7 0.019 0.484 _(ac)SESGHS(ph)QPGLYGIER_
SMG9 Phosphorylation S53 0.275 -0.108 _DAS(ph)EETSTSVM(ox)QK_
SMG9 Phosphorylation S451 -0.910 -0.251 _AGPGSS(ph)PLFSLLPGYR_
SMG9 Phosphorylation S32 -0.253 -0.447 _WKEPGSGGPQNLS(ph)GPGGR_
SMG9 Phosphorylation S450 -0.625 _AGPGS(ph)SPLFSLLPGYR_

Background Information for SMG9:


Pubmed-SMG9 »
Uniprot-SMG9 »
Biogrid-SMG9 »
ProteomicsDB-SMG9 »

Tumorportal-SMG9 »
COSMIC-SMG9 »
GenomeRNAi-SMG9 »
Genecards-SMG9


Protein-protein Interactions for SMG9
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait SMG9 Cat. description Hein, Mann, Cell 2015


Protein Domains in SMG9
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members P-loop_NTPase IPR027417 2.83
Category members Smg8/Smg9 IPR019354 0


Protein complexes (CORUM database) featuring SMG9
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring SMG9
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Pathway Pathway_770 REACTOME_NONSENSE_MEDIATED_DECAY_ENHANCED_BY_THE_EXON_JUNCTION_COMPLEX 0 INF
Category members Pathway Pathway_771 REACTOME_METABOLISM_OF_RNA 0 INF
Category members Pathway Pathway_773 REACTOME_METABOLISM_OF_MRNA 0 INF
Category members GO Category GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Database INF
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005829 cytosol Database INF
Category members GO Category GO:0010467 gene expression Database INF
Category members GO Category GO:0016070 RNA metabolic process Database INF
Category members GO Category GO:0016071 mRNA metabolic process Database INF
Category members GO Category GO:0005622 intracellular Database 0.32
Category members GO Category GO:0042802 identical protein binding Database 0.26


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