bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: SMEK2

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
SMEK2 0 -1.171

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
SMEK2 Phosphorylation S839 -1.171 _GSLVGLVDYPDDEEEDEEEES(ph)SPR_
SMEK2 Phosphorylation S840 -1.171 _GSLVGLVDYPDDEEEDEEEES(ph)SPR_

Background Information for SMEK2:


Pubmed-SMEK2 »
Uniprot-SMEK2 »
Biogrid-SMEK2 »
ProteomicsDB-SMEK2 »

Tumorportal-SMEK2 »
COSMIC-SMEK2 »
GenomeRNAi-SMEK2 »
Genecards-SMEK2


Protein-protein Interactions for SMEK2
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait BAG6;BAT3 Cat. description Hein, Mann, Cell 2015
Category members IP bait HNRNPD Cat. description Hein, Mann, Cell 2015
Category members IP bait OSGEP Cat. description Hein, Mann, Cell 2015
Category members IP bait PPP2CB Cat. description Hein, Mann, Cell 2015
Category members IP bait PPP4C Cat. description Hein, Mann, Cell 2015
Category members IP bait PPP4R2 Cat. description Hein, Mann, Cell 2015
Category members IP bait ALDH3A2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait BNIP3 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait CCDC6 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait COMTD1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait CRAMP1L Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait FAM19A3 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PMPCB Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PNKD Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PPP4R2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SMEK1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SPATA1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait ZNF785 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in SMEK2
Domain name Domain Description TC-NER relevance -log10(p-value)


Protein complexes (CORUM database) featuring SMEK2
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring SMEK2
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members GO Category GO:0005488 binding Database 9.32
Category members GO Category GO:0005815 microtubule organizing center Database 0.39
Category members GO Category GO:0006470 protein dephosphorylation Database 0
Category members GO Category GO:0019216 regulation of lipid metabolic process Database 0
Category members GO Category GO:0030289 protein phosphatase 4 complex Database 0
Category members GO Category GO:0045722 positive regulation of gluconeogenesis Database 0


.

© Copyright Svejstrup Laboratory 2015