bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »
bioLOGIC Data

bioLOGIC Data


Exact search

Query: SLC38A1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
SLC38A1 0 4.679 1.810 -1.030 1.114 0.810

PTM Sites:

Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
SLC38A1 Phosphorylation S52 0.712 0.852 _S(ph)LTNSHLEK_
SLC38A1 Phosphorylation S49 0.555 0.780 _FISDRES(ph)R_
SLC38A1 Ubiquitylation K387 0.537 _TK(gl)FNLCR_
SLC38A1 Ubiquitylation K385 0.484 _SSLFELAKK(gl)_
SLC38A1 Phosphorylation S56 0.368 0.402 _SLTNS(ph)HLEK_
SLC38A1 Ubiquitylation K60 0.654 0.289 _SLTNSHLEK(gl)K_
SLC38A1 Ubiquitylation K61 0.646 0.289 _SLTNSHLEKK(gl)_

Background Information for SLC38A1:





Protein-protein Interactions for SLC38A1

Show screen data for Category Name and Description Link to cat description Data Source


Protein Domains in SLC38A1

Domain name Domain Description TC-NER relevance -log10(p-value)
Category members AA_transpt_TM IPR013057 0


Protein complexes (CORUM database) featuring SLC38A1

Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring SLC38A1

Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0016021 integral to membrane Database 7.67
Category members GO Category GO:0005886 plasma membrane Database 1.21
Category members GO Category GO:0016020 membrane Database 0.52
Category members Pathway Pathway_1307 REACTOME_AMINO_ACID_TRANSPORT_ACROSS_THE_PLASMA_MEMBRANE 0 0.32
Category members Pathway Pathway_96 REACTOME_SLC_MEDIATED_TRANSMEMBRANE_TRANSPORT 0 0.23
Category members GO Category GO:0030424 axon Database 0.23
Category members GO Category GO:0007268 synaptic transmission Database 0.23
Category members GO Category GO:0006811 ion transport Database 0.18
Category members GO Category GO:0055085 transmembrane transport Database 0.12
Category members Pathway Pathway_1271 REACTOME_AMINO_ACID_AND_OLIGOPEPTIDE_SLC_TRANSPORTERS 0 0.11
Category members Pathway Pathway_99 REACTOME_TRANSMEMBRANE_TRANSPORT_OF_SMALL_MOLECULES 0 0.08
Category members GO Category GO:0006868 glutamine transport Database 0.08
Category members GO Category GO:0015186 L-glutamine transmembrane transporter activity Database 0.08
Category members GO Category GO:0015804 neutral amino acid transport Database 0.03
Category members GO Category GO:0015175 neutral amino acid transmembrane transporter activity Database 0.02
Category members Pathway Pathway_1207 REACTOME_TRANSPORT_OF_INORGANIC_CATIONS_ANIONS_AND_AMINO_ACIDS_OLIGOPEPTIDES 0 0
Category members Pathway Pathway_139 REACTOME_NEURONAL_SYSTEM 0 0
Category members Pathway Pathway_140 REACTOME_TRANSMISSION_ACROSS_CHEMICAL_SYNAPSES 0 0
Category members GO Category GO:0001504 neurotransmitter uptake Database 0
Category members GO Category GO:0005283 sodium:amino acid symporter activity Database 0
Category members GO Category GO:0006865 amino acid transport Database 0


© Copyright Svejstrup Laboratory 2015