bioLOGIC-db

bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

Query: SERINC1

RNAi screen result	RNAPII IP (PI)	CSB IP	CSB IP (PI)	Chrom.	Chrom. (PI)	Phosphorylation	Ubiquitylation
W

[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:
Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen

Gene name	Point score	Z-score sums	RNAi high	RNAi low	RNAPII-IP (PI)	CSB-IP	CSB-IP (PI)	Chrom.	Chrom. (PI)
SERINC1	0	1.956	0.890	-0.560

PTM Sites:
Back to Protein Results | Red/green: hit at lower/upper end of the respective screen

Gene name	PTM type	PTM site	UV	UV (PI)	Sequence
SERINC1	Phosphorylation	S364	0.609	0.810	_SDGS(ph)LEDGDDVHR_
SERINC1	Phosphorylation	T347	0.299	0.765	_LTLT(ph)SDESTLIEDGGAR_
SERINC1	Ubiquitylation	K343	-0.132	0.669	_TSNNSQVNK(gl)LTLTSDESTLIEDGGAR_

Background Information for SERINC1:

Pubmed-SERINC1 »

Uniprot-SERINC1 »

Biogrid-SERINC1 »

ProteomicsDB-SERINC1 »

Tumorportal-SERINC1 »

COSMIC-SERINC1 »

GenomeRNAi-SERINC1 »

Genecards-SERINC1

Protein-protein Interactions for SERINC1

Show screen data for	Category Name and Description	Link to cat description	Data Source
Category members	IP bait CEP44	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait PTEN	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait VPS18	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait ASGR2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait C19orf46	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait CD97	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait GPR114	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait HTR2C	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait IPPK	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait LPAR1	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait P2RY8	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SERINC1	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SLC22A16	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SLC22A9	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SLC2A12	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SLC9A6	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SPPL2B	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait TMEM63A	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait VIPR2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015

Protein Domains in SERINC1

	Domain name	Domain Description	TC-NER relevance -log10(p-value)
Category members	TDE1/TMS	IPR005016	0

Protein complexes (CORUM database) featuring SERINC1

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)

Categories featuring SERINC1

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	GO Category	GO:0005515	protein binding	Database	INF
Category members	GO Category	GO:0016021	integral to membrane	Database	7.67
Category members	GO Category	GO:0005789	endoplasmic reticulum membrane	Database	1.57
Category members	GO Category	GO:0005886	plasma membrane	Database	1.21
Category members	GO Category	GO:0016020	membrane	Database	0.52
Category members	GO Category	GO:0006658	phosphatidylserine metabolic process	Database	0
Category members	GO Category	GO:0006665	sphingolipid metabolic process	Database	0
Category members	GO Category	GO:0008654	phospholipid biosynthetic process	Database	0
Category members	GO Category	GO:0015194	L-serine transmembrane transporter activity	Database	0
Category members	GO Category	GO:0015825	L-serine transport	Database	0
Category members	GO Category	GO:0051347	positive regulation of transferase activity	Database	0