bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: RTCA

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
RTCA 0 -0.453 0.300 -0.570 -0.486 -0.250 -0.093
RTCA 0 -0.453 0.300 -0.570 0.099

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
RTCA Ubiquitylation K176 -0.417 _MSPVK(gl)QLNPINLTER_
RTCA Ubiquitylation K191 -0.543 _GCVTK(gl)IYGR_
RTCA Ubiquitylation K163 0.694 _GYYPK(gl)GGGEVIVR_

Background Information for RTCA:


Pubmed-RTCA »
Uniprot-RTCA »
Biogrid-RTCA »
ProteomicsDB-RTCA »

Tumorportal-RTCA »
COSMIC-RTCA »
GenomeRNAi-RTCA »
Genecards-RTCA


Protein-protein Interactions for RTCA
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait SASS6 Cat. description Hein, Mann, Cell 2015


Protein Domains in RTCA
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members RNA3'-term_phos_cycl_insert IPR013791 0.28
Category members RNA3'_phos_cyclase_dom IPR023797 0.28
Category members RNA3'P_cycl/enolpyr_Trfase_a/b IPR013792 0.06


Protein complexes (CORUM database) featuring RTCA
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring RTCA
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0003723 RNA binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005654 nucleoplasm Database INF
Category members GO Category GO:0005524 ATP binding Database 5.54
Category members GO Category GO:0003963 RNA-3'-phosphate cyclase activity Database 0.28
Category members GO Category GO:0006396 RNA processing Database 0.17
Category members GO Category GO:0003824 catalytic activity Database 0.11


.

© Copyright Svejstrup Laboratory 2015