bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: RGPD2

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
RGPD2 1 5.149 0.451 0.368
RGPD2 1 5.149 1.079 -0.385 0.549 0.456

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
RGPD2 Ubiquitylation K2061 0.441 0.872 _GLGNLK(gl)ILK_
RGPD2 Ubiquitylation K106 0.667 _IAELLCK(gl)NDVTDGR_
RGPD2 Ubiquitylation K1220 0.641 _GIGNVK(gl)ILR_
RGPD2 Phosphorylation Y2666 0.598 _NRPDY(ph)VSEEEEDDEDFETAVKK_
RGPD2 Phosphorylation T2293 0.717 0.584 _LNQSGTSVGT(ph)DEESDVTQEEER_
RGPD2 Phosphorylation S796 0.553 0.575 _SYKYS(ph)PK_
RGPD2 Phosphorylation S2668 0.584 0.573 _NRPDYVS(ph)EEEEDDEDFETAVK_
RGPD2 Phosphorylation S3207 0.368 0.527 _IESFGS(ph)PK_
RGPD2 Phosphorylation S1456 0.018 0.508 _SGSSFVHQAS(ph)FK_
RGPD2 Phosphorylation S1573 0.499 _CVACQNPDKPS(ph)PSTSVPAPASFK_
RGPD2 Phosphorylation S2805 -0.018 0.448 _SISS(ph)PSVSSETMDKPVDLSTR_
RGPD2 Phosphorylation S2454 0.335 0.393 _DSLIT(ph)PHVS(ph)R_
RGPD2 Ubiquitylation K2379 -0.664 0.332 _DQVLK(gl)LCANHR_
RGPD2 Ubiquitylation K2358 0.436 0.327 _GIGDIK(gl)ILQNYDNK_
RGPD2 Ubiquitylation K2396 -0.954 0.190 _ITPDMTLQNMK(gl)GTER_
RGPD2 Phosphorylation S2280 0.065 0.135 _SALSPSKS(ph)PAK_
RGPD2 Phosphorylation S2510 -0.171 0.107 _AVVS(ph)PPKFVFGSESVK_
RGPD2 Phosphorylation S1400 -0.440 0.082 _ELVGPPLAETVFT(ph)PKTS(ph)PENVQDR_
RGPD2 Phosphorylation S955 -0.786 0.030 _FESPATGILS(ph)PR_
RGPD2 Phosphorylation S2276 0.074 0.029 _SALS(ph)PSKSPAK_
RGPD2 Ubiquitylation K2935 -1.498 0.007 _SGEEDEEILFK(gl)ER_
RGPD2 Phosphorylation S788 0.362 -0.041 _YSLS(ph)PSK_
RGPD2 Phosphorylation S21 0.047 -0.107 _YIASVQGSTPS(ph)PR_
RGPD2 Ubiquitylation K2592 -0.298 _NSDIEQSSDSK(gl)VK_
RGPD2 Ubiquitylation K2594 -0.298 _NSDIEQSSDSK(gl)VK_
RGPD2 Phosphorylation T1396 -0.510 -0.398 _ELVGPPLAETVFT(ph)PKT(ph)SPENVQDR_
RGPD2 Phosphorylation S2900 -0.395 -0.513 _VGEDEDGS(ph)DEEVVHNEDIHFEPIVSLPEVEVK_
RGPD2 Ubiquitylation K776 -0.046 -0.521 _NADSEIK(gl)HSTPSPTR_
RGPD2 Ubiquitylation K94 -0.527 _SVELNPTQK(gl)DLVLK_
RGPD2 Phosphorylation S2250 1.539 -0.701 _EDALDDSVSSSSVHASPLAS(ph)SPVRK_
RGPD2 Phosphorylation T2613 -0.775 -0.709 _NLFASFPTEESSINYTFKT(ph)PEK_
RGPD2 Ubiquitylation K1963 -0.768 _STSGEGFQFGK(gl)K_
RGPD2 Ubiquitylation K1964 -0.768 _STSGEGFQFGK(gl)K_
RGPD2 Phosphorylation S1160 -1.328 _NHETDGGS(ph)AHGDDDDDGPHFEPVVPLPDKIEVK_
RGPD2 Phosphorylation T1399 -0.665 _ELVGPPLAETVFT(ph)PKT(ph)SPENVQDR_
RGPD2 Phosphorylation S2251 -0.023 _EDALDDSVSSSSVHASPLASS(ph)PVRK_
RGPD2 Ubiquitylation K2650 0.439 _ALATK(gl)LK_
RGPD2 Phosphorylation S2804 0.874 _SIS(ph)SPSVSSETM(ox)DKPVDLSTR_

Background Information for RGPD2:


Pubmed-RGPD2 »
Uniprot-RGPD2 »
Biogrid-RGPD2 »
ProteomicsDB-RGPD2 »

Tumorportal-RGPD2 »
COSMIC-RGPD2 »
GenomeRNAi-RGPD2 »
Genecards-RGPD2


Protein-protein Interactions for RGPD2
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait B2M Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait EXOC3 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait RAN Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TACR1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TMEM194A Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in RGPD2
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Ran_bind_dom IPR000156 2.46
Category members TPR_1 IPR001440 1.39
Category members TPR-contain_dom IPR013026 0.97
Category members TPR_repeat IPR019734 0.93
Category members TPR_2 IPR013105 0.45
Category members GRIP IPR000237 0.08


Protein complexes (CORUM database) featuring RGPD2
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring RGPD2
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0046907 intracellular transport Database 3.25
Category members GO Category GO:0000042 protein targeting to Golgi Database 0.2


.

© Copyright Svejstrup Laboratory 2015