bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: RERE

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
RERE 0 1.107 1.800 -0.640

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
RERE Phosphorylation S642 0.452 0.187 _VKEEASS(ph)PLK_
RERE Phosphorylation S656 0.270 0.013 _VAS(ph)DTEEADRTSSK_
RERE Phosphorylation S142 -1.523 _S(ph)PTPALCDPPACSLPVASQPPQHLSEAGR_
RERE Phosphorylation T144 -1.523 _S(ph)PTPALCDPPACSLPVASQPPQHLSEAGR_
RERE Ubiquitylation K378 0.468 _DDTTLNALNTLHESGYDAGK(gl)ALQR_
RERE Ubiquitylation K385 -0.637 _LVK(gl)KPVPK_

Background Information for RERE:


Pubmed-RERE »
Uniprot-RERE »
Biogrid-RERE »
ProteomicsDB-RERE »

Tumorportal-RERE »
COSMIC-RERE »
GenomeRNAi-RERE »
Genecards-RERE


Protein-protein Interactions for RERE
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait HDAC1 Cat. description Hein, Mann, Cell 2015
Category members IP bait WDR5 Cat. description Hein, Mann, Cell 2015
Category members IP bait CDO1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait HDAC1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait WDR5 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in RERE
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members SANT/Myb IPR001005 2.18
Category members BAH_dom IPR001025 0.62
Category members ELM2_dom IPR000949 0.51
Category members Znf_GATA IPR000679 0.29
Category members Homeodomain-like IPR009057 0


Protein complexes (CORUM database) featuring RERE
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring RERE
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0003682 chromatin binding Database 6.07
Category members GO Category GO:0006338 chromatin remodeling Database 4.95
Category members GO Category GO:0005739 mitochondrion Database 1.67
Category members GO Category GO:0003677 DNA binding Database 1.53
Category members GO Category GO:0006607 NLS-bearing protein import into nucleus Database 1.48
Category members GO Category GO:0006351 transcription, DNA-templated Database 1.07
Category members GO Category GO:0003700 sequence-specific DNA binding transcription factor activity Database 0.63
Category members GO Category GO:0007275 multicellular organismal development Database 0.31
Category members GO Category GO:0008270 zinc ion binding Database 0.29
Category members GO Category GO:0043565 sequence-specific DNA binding Database 0.18
Category members GO Category GO:0000118 histone deacetylase complex Database 0
Category members GO Category GO:0006355 regulation of transcription, DNA-dependent Database 0


.

© Copyright Svejstrup Laboratory 2015