bioLOGIC-db

bioLOGIC Data

Query: RBM25

[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:
Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen

Gene name	Point score	Z-score sums	RNAi high	RNAi low	RNAPII-IP (PI)	CSB-IP	CSB-IP (PI)	Chrom.	Chrom. (PI)
RBM25	0	3.608	0.270	0.190	1.164	0.063	0.866	0.148	0.221

PTM Sites:
Back to Protein Results | Red/green: hit at lower/upper end of the respective screen

Gene name	PTM type	PTM site	UV	UV (PI)	Sequence
RBM25	Phosphorylation	S583		0.732	_QEPES(ph)EEEEEEKQEKEEK_
RBM25	Phosphorylation	S677	0.166	-0.240	_LGASNS(ph)PGQPNSVK_
RBM25	Phosphorylation	S683		-1.505	_LGASNS(ph)PGQPNS(ph)VK_
RBM25	Ubiquitylation	K685	0.248		_LGASNSPGQPNSVK(gl)R_

ProteomicsDB-RBM25 »

Protein-protein Interactions for RBM25

Show screen data for	Category Name and Description	Link to cat description	Data Source
Category members	IP bait AZI1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait IFFO1;IFFO2	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait KIFC1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait NEIL3	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait TGM2	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait TOPBP1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait ZWINT	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait C16orf80	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait JMJD6	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait NKAP	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait PRPF40B	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait RGS9	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SLC30A4	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait ZC3H18	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015

Protein Domains in RBM25

	Domain name	Domain Description	TC-NER relevance -log10(p-value)
Category members	RRM_dom	IPR000504	4.34
Category members	PWI_dom	IPR002483	0

Protein complexes (CORUM database) featuring RBM25

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	Corum	351	Spliceosome	Database	9.3

Categories featuring RBM25

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	DDR Literature	pubmedid:24332808	Marechal et al., 2014 RPA-mediated recruitment		INF
Category members	GO Category	GO:0005515	protein binding	Database	INF
Category members	GO Category	GO:0005634	nucleus	Database	INF
Category members	GO Category	GO:0005737	cytoplasm	Database	12.81
Category members	GO Category	GO:0008380	RNA splicing	Database	10.77
Category members	Pathway	Pathway_851	KEGG_SPLICEOSOME	0	7.94
Category members	GO Category	GO:0000166	nucleotide binding	Database	5.91
Category members	GO Category	GO:0016607	nuclear speck	Database	4.84
Category members	GO Category	GO:0005681	spliceosomal complex	Database	3.88
Category members	GO Category	GO:0006397	mRNA processing	Database	3.76
Category members	DDR Literature	pubmedid:19647519	Paulsen et al., 2009 siRNA screen for g-H2A.x phosphorylation		3.6
Category members	GO Category	GO:0003729	mRNA binding	Database	1.38
Category members	GO Category	GO:0003676	nucleic acid binding	Database	0.83
Category members	GO Category	GO:0042981	regulation of apoptotic process	Database	0.79
Category members	GO Category	GO:0000381	regulation of alternative mRNA splicing, via spliceosome	Database	0.5