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Query: PTRF

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
PTRF 2 4.419 -1.020 1.500 -0.572 -1.157

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
PTRF Phosphorylation S300 1.826 1.868 _S(ph)FTPDHVVYAR_
PTRF Ubiquitylation K95 0.601 0.353 _QAEMEGAVQSIQGELSK(gl)LGK_
PTRF Ubiquitylation K109 0.147 -0.672 _AHATTSNTVSK(gl)LLEK_
PTRF Ubiquitylation K113 0.311 _LLEK(gl)VRK_
PTRF Ubiquitylation K122 -0.114 _KVSVNVK(gl)TVR_
PTRF Ubiquitylation K161 -0.248 _VMIYQDEVK(gl)LPAK_
PTRF Ubiquitylation K254 0.236 _TRENLEK(gl)TR_
PTRF Ubiquitylation K260 -0.031 _LKTK(gl)ENLEK_
PTRF Ubiquitylation K299 0.511 _K(gl)SFTPDHVVYAR_

Background Information for PTRF:


Pubmed-PTRF »
Uniprot-PTRF »
Biogrid-PTRF »
ProteomicsDB-PTRF »

Tumorportal-PTRF »
COSMIC-PTRF »
GenomeRNAi-PTRF »
Genecards-PTRF


Protein-protein Interactions for PTRF
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait ATP6AP2 Cat. description Hein, Mann, Cell 2015
Category members IP bait BMPR1A Cat. description Hein, Mann, Cell 2015
Category members IP bait C1QBP Cat. description Hein, Mann, Cell 2015
Category members IP bait CHMP4B Cat. description Hein, Mann, Cell 2015
Category members IP bait CKAP5 Cat. description Hein, Mann, Cell 2015
Category members IP bait DBN1 Cat. description Hein, Mann, Cell 2015
Category members IP bait FAM82A2 Cat. description Hein, Mann, Cell 2015
Category members IP bait FLOT1 Cat. description Hein, Mann, Cell 2015
Category members IP bait FLOT2 Cat. description Hein, Mann, Cell 2015
Category members IP bait GOLT1B Cat. description Hein, Mann, Cell 2015
Category members IP bait KIAA1430 Cat. description Hein, Mann, Cell 2015
Category members IP bait MBOAT1 Cat. description Hein, Mann, Cell 2015
Category members IP bait MMGT1 Cat. description Hein, Mann, Cell 2015
Category members IP bait MYO19 Cat. description Hein, Mann, Cell 2015
Category members IP bait PTPN1 Cat. description Hein, Mann, Cell 2015
Category members IP bait PTPN23 Cat. description Hein, Mann, Cell 2015
Category members IP bait RAB2A Cat. description Hein, Mann, Cell 2015
Category members IP bait RAB5A Cat. description Hein, Mann, Cell 2015
Category members IP bait RAB5C Cat. description Hein, Mann, Cell 2015
Category members IP bait RAB7A Cat. description Hein, Mann, Cell 2015
Category members IP bait RAD18 Cat. description Hein, Mann, Cell 2015
Category members IP bait SEPT9 Cat. description Hein, Mann, Cell 2015
Category members IP bait SET Cat. description Hein, Mann, Cell 2015
Category members IP bait TMED2 Cat. description Hein, Mann, Cell 2015
Category members IP bait TMEM63B Cat. description Hein, Mann, Cell 2015
Category members IP bait VAPA Cat. description Hein, Mann, Cell 2015
Category members IP bait YIPF5 Cat. description Hein, Mann, Cell 2015
Category members IP bait CAV3 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait EXOC1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait FAM9A Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PTRF Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SNAP29 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TSKS Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait UBE2O Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in PTRF
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members T7SS_ESAT-6-like IPR010310 0


Protein complexes (CORUM database) featuring PTRF
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring PTRF
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005654 nucleoplasm Database INF
Category members GO Category GO:0005829 cytosol Database INF
Category members GO Category GO:0010467 gene expression Database INF
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members Pathway Pathway_348 REACTOME_TRANSCRIPTION 0 9
Category members Pathway Pathway_351 REACTOME_RNA_POL_I_TRANSCRIPTION 0 8.31
Category members Pathway Pathway_350 REACTOME_RNA_POL_I_RNA_POL_III_AND_MITOCHONDRIAL_TRANSCRIPTION 0 7.97
Category members GO Category GO:0006360 transcription from RNA polymerase I promoter Database 2.66
Category members GO Category GO:0006361 transcription initiation from RNA polymerase I promoter Database 2.41
Category members Pathway Pathway_345 REACTOME_RNA_POL_I_TRANSCRIPTION_TERMINATION 0 1.9
Category members GO Category GO:0006363 termination of RNA polymerase I transcription Database 1.71
Category members GO Category GO:0005739 mitochondrion Database 1.67
Category members GO Category GO:0005783 endoplasmic reticulum Database 0.62
Category members GO Category GO:0005901 caveola Database 0
Category members GO Category GO:0006355 regulation of transcription, DNA-dependent Database 0


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