bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: POMGNT1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
POMGNT1 0 -1.033 -0.420 -0.440

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
POMGNT1 Ubiquitylation K11 -1.033 _(ac)MDDWKPSPLIK(gl)PFGAR_

Background Information for POMGNT1:


Pubmed-POMGNT1 »
Uniprot-POMGNT1 »
Biogrid-POMGNT1 »
ProteomicsDB-POMGNT1 »

Tumorportal-POMGNT1 »
COSMIC-POMGNT1 »
GenomeRNAi-POMGNT1 »
Genecards-POMGNT1


Protein-protein Interactions for POMGNT1
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait ACCN4 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait ADAM32 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait ATP6V0A2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait CLEC2D Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait MCOLN3 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait MME Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait RANBP6 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TMEM5 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TMPRSS11B Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TOR1AIP2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in POMGNT1
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Glyco_trans_13 IPR004139 0.26
Category members Nucleotide-diphossugar_trans IPR029044 0.21


Protein complexes (CORUM database) featuring POMGNT1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring POMGNT1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0016021 integral to membrane Database 7.67
Category members Disease phenotype Congenital_muscular_dystrophy_with_cerebellar_involvement Congenital muscular dystrophy with cerebellar involvement Database 0.4
Category members Disease phenotype MUSCULAR_DYSTROPHY-DYSTROGLYCANOPATHY_(CONGENITAL_WITH_BRAIN_AND_EYE MUSCULAR DYSTROPHY-DYSTROGLYCANOPATHY (CONGENITAL WITH BRAIN AND EYE Database 0.33
Category members GO Category GO:0006493 protein O-linked glycosylation Database 0.32
Category members Disease phenotype Walker-Warburg_syndrome Walker-Warburg syndrome Database 0.3
Category members Disease phenotype MUSCULAR_DYSTROPHY-DYSTROGLYCANOPATHY_(CONGENITAL_WITH_MENTAL_RETARDATION) MUSCULAR DYSTROPHY-DYSTROGLYCANOPATHY (CONGENITAL WITH MENTAL RETARDATION) Database 0.23
Category members GO Category GO:0006486 protein glycosylation Database 0.21
Category members Disease phenotype Muscle_eye_brain_disease Muscle eye brain disease Database 0.11
Category members GO Category GO:0000139 Golgi membrane Database 0
Category members GO Category GO:0008375 acetylglucosaminyltransferase activity Database 0
Category members GO Category GO:0047223 beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity Database 0


.

© Copyright Svejstrup Laboratory 2015