bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: PFDN4

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
PFDN4 0 0.874 -0.890 0.720

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
PFDN4 Ubiquitylation K37 0.154 _ITELK(gl)EEIEVK_

Background Information for PFDN4:


Pubmed-PFDN4 »
Uniprot-PFDN4 »
Biogrid-PFDN4 »
ProteomicsDB-PFDN4 »

Tumorportal-PFDN4 »
COSMIC-PFDN4 »
GenomeRNAi-PFDN4 »
Genecards-PFDN4


Protein-protein Interactions for PFDN4
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait PFDN2 Cat. description Hein, Mann, Cell 2015
Category members IP bait VBP1 Cat. description Hein, Mann, Cell 2015
Category members IP bait DCAF5 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait DDB2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait GNB2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PFDN4 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait WDR86 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in PFDN4
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members PFD_beta-like IPR002777 0.31
Category members Prefoldin IPR009053 0


Protein complexes (CORUM database) featuring PFDN4
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 112 Prefoldin complex Database 0.27
Category members Corum 33 Prefoldin Database 0.27


Categories featuring PFDN4
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005829 cytosol Database INF
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members Pathway Pathway_11 REACTOME_METABOLISM_OF_PROTEINS 0 12.01
Category members GO Category GO:0044267 cellular protein metabolic process Database 10.42
Category members GO Category GO:0006457 protein folding Database 4.93
Category members GO Category GO:0051082 unfolded protein binding Database 3.74
Category members GO Category GO:0051087 chaperone binding Database 1.69
Category members GO Category GO:0005739 mitochondrion Database 1.67
Category members Pathway Pathway_742 REACTOME_PROTEIN_FOLDING 0 0.9
Category members GO Category GO:0051084 'de novo' posttranslational protein folding Database 0.63
Category members Pathway Pathway_1288 REACTOME_PREFOLDIN_MEDIATED_TRANSFER_OF_SUBSTRATE_TO_CCT_TRIC 0 0.4
Category members GO Category GO:0016272 prefoldin complex Database 0.15


.

© Copyright Svejstrup Laboratory 2015