bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: NELFE

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
NELFE 1 4.218 -0.120 0.720

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
NELFE Phosphorylation S58 2.172 1.326 _RSLS(ph)EQPVMDTATATEQAK_
NELFE Phosphorylation S122 1.266 0.862 _SIS(ph)ADDDLQESSR_
NELFE Phosphorylation S258 0.209 0.547 _SDS(ph)FPER_
NELFE Phosphorylation S120 0.289 _S(ph)ISADDDLQESSR_
NELFE Phosphorylation S56 2.001 0.234 _S(ph)LSEQPVMDTATATEQAK_
NELFE Phosphorylation S138 0.245 -0.423 _S(ph)LYESFVSSSDR_
NELFE Phosphorylation S288 -0.728 _GAFS(ph)PFGNIIDLSM(ox)DPPR_
NELFE Phosphorylation S360 0.183 -0.789 _SVWGSLAVQNS(ph)PK_
NELFE Phosphorylation S172 -0.837 _ELGPDGEEAEGPGAGDGPPRS(ph)FDWGYEER_

Background Information for NELFE:


Pubmed-NELFE »
Uniprot-NELFE »
Biogrid-NELFE »
ProteomicsDB-NELFE »

Tumorportal-NELFE »
COSMIC-NELFE »
GenomeRNAi-NELFE »
Genecards-NELFE


Protein-protein Interactions for NELFE
Show screen data for Category Name and Description Link to cat description Data Source


Protein Domains in NELFE
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members RRM_dom IPR000504 4.34


Protein complexes (CORUM database) featuring NELFE
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 2598 NELF complex (Negative elongation factor complex) Database 0.47
Category members Corum 281 NELF complex (Negative elongation factor complex) Database 0.47


Categories featuring NELFE
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0003723 RNA binding Database INF
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005654 nucleoplasm Database INF
Category members GO Category GO:0010467 gene expression Database INF
Category members GO Category GO:0016032 viral process Database INF
Category members GO Category GO:0000166 nucleotide binding Database 5.91
Category members GO Category GO:0050434 positive regulation of viral transcription Database 4.8
Category members GO Category GO:0006368 transcription elongation from RNA polymerase II promoter Database 2.03
Category members GO Category GO:0005739 mitochondrion Database 1.67
Category members GO Category GO:0006366 transcription from RNA polymerase II promoter Database 0.96
Category members GO Category GO:0003676 nucleic acid binding Database 0.83
Category members GO Category GO:0032021 NELF complex Database 0.47
Category members GO Category GO:0008150 biological_process Database 0
Category members GO Category GO:0034244 negative regulation of transcription elongation from RNA polymerase II promoter Database 0


.

© Copyright Svejstrup Laboratory 2015