bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: LIMCH1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
LIMCH1 0 1.854 -0.510 0.690

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
LIMCH1 Phosphorylation S1357 0.304 0.860 _SINHQIES(ph)PSER_
LIMCH1 Phosphorylation S1103 -0.228 -0.231 _S(ph)PEPEATLTFPFLDK_

Background Information for LIMCH1:


Pubmed-LIMCH1 »
Uniprot-LIMCH1 »
Biogrid-LIMCH1 »
ProteomicsDB-LIMCH1 »

Tumorportal-LIMCH1 »
COSMIC-LIMCH1 »
GenomeRNAi-LIMCH1 »
Genecards-LIMCH1


Protein-protein Interactions for LIMCH1
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait ACTB Cat. description Hein, Mann, Cell 2015
Category members IP bait ANLN Cat. description Hein, Mann, Cell 2015
Category members IP bait CALML3 Cat. description Hein, Mann, Cell 2015
Category members IP bait CAPZA2 Cat. description Hein, Mann, Cell 2015
Category members IP bait CDK2 Cat. description Hein, Mann, Cell 2015
Category members IP bait IQGAP1 Cat. description Hein, Mann, Cell 2015
Category members IP bait ITGA5 Cat. description Hein, Mann, Cell 2015
Category members IP bait KIF3C Cat. description Hein, Mann, Cell 2015
Category members IP bait MYH10 Cat. description Hein, Mann, Cell 2015
Category members IP bait MYH9 Cat. description Hein, Mann, Cell 2015
Category members IP bait MYO18A Cat. description Hein, Mann, Cell 2015
Category members IP bait MYO19 Cat. description Hein, Mann, Cell 2015
Category members IP bait MYO1C Cat. description Hein, Mann, Cell 2015
Category members IP bait PPP1CB Cat. description Hein, Mann, Cell 2015
Category members IP bait LIMCH1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait OTUD6B Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in LIMCH1
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members CH-domain IPR001715 0.63
Category members SM22_calponin IPR003096 0.45
Category members Calponin IPR001997 0.08
Category members Znf_LIM IPR001781 0


Protein complexes (CORUM database) featuring LIMCH1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring LIMCH1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members DDR Literature pubmedid:24332808 Marechal et al., 2014 RPA-mediated recruitment INF
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0003779 actin binding Database 5.41
Category members GO Category GO:0008270 zinc ion binding Database 0.29
Category members GO Category GO:0031032 actomyosin structure organization Database 0.15


.

© Copyright Svejstrup Laboratory 2015