bioLOGIC-db

bioLOGIC Data

Query: HNRNPF

[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:
Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen

Gene name	Point score	Z-score sums	RNAi high	RNAi low	RNAPII-IP (PI)	CSB-IP	CSB-IP (PI)	Chrom.	Chrom. (PI)
HNRNPF	0	1.234	-0.700	-0.130	-0.230	-0.640	-0.615

PTM Sites:
Back to Protein Results | Red/green: hit at lower/upper end of the respective screen

Gene name	PTM type	PTM site	UV	UV (PI)	Sequence
HNRNPF	Ubiquitylation	K224	0.282	1.152	_YIGIVK(gl)QAGLER_
HNRNPF	Ubiquitylation	K185	0.320	0.198	_YIEVFK(gl)SSQEEVR_
HNRNPF	Ubiquitylation	K87	0.443	-0.048	_YIEVFK(gl)SHR_
HNRNPF	Ubiquitylation	K200	-2.522		_SYSDPPLK(gl)FMSVQRPGPYDRPGTAR_

ProteomicsDB-HNRNPF »

Protein-protein Interactions for HNRNPF

Show screen data for	Category Name and Description	Link to cat description	Data Source
Category members	IP bait HNRNPF	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait HNRNPH2	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait MATR3	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait AMMECR1	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait ANGEL2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait HSD17B8	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait OBFC1	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait PECR	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait RBM7	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SUPV3L1	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015

Protein Domains in HNRNPF

	Domain name	Domain Description	TC-NER relevance -log10(p-value)
Category members	RRM_dom	IPR000504	4.34
Category members	Znf_CHHC	IPR012996	0

Protein complexes (CORUM database) featuring HNRNPF

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	Corum	1181	C complex spliceosome	Database	2.39
Category members	Corum	1287	HNRPF-HNRPH1 complex	Database	0
Category members	Corum	1288	DCS complex (PTBP1, PTBP2, HNRPH1, HNRPF)	Database	0

Categories featuring HNRNPF

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	DDR Literature	pubmedid:24332808	Marechal et al., 2014 RPA-mediated recruitment		INF
Category members	GO Category	GO:0003723	RNA binding	Database	INF
Category members	GO Category	GO:0005515	protein binding	Database	INF
Category members	GO Category	GO:0005634	nucleus	Database	INF
Category members	GO Category	GO:0005654	nucleoplasm	Database	INF
Category members	GO Category	GO:0010467	gene expression	Database	INF
Category members	Pathway	Pathway_373	REACTOME_MRNA_PROCESSING	0	12.92
Category members	GO Category	GO:0005737	cytoplasm	Database	12.81
Category members	Pathway	Pathway_380	REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA	0	12.24
Category members	GO Category	GO:0008380	RNA splicing	Database	10.77
Category members	GO Category	GO:0000398	mRNA splicing, via spliceosome	Database	7.06
Category members	Pathway	Pathway_377	REACTOME_MRNA_SPLICING	0	6.99
Category members	GO Category	GO:0000166	nucleotide binding	Database	5.91
Category members	GO Category	GO:0071013	catalytic step 2 spliceosome	Database	2.28
Category members	GO Category	GO:0003676	nucleic acid binding	Database	0.83
Category members	GO Category	GO:0006396	RNA processing	Database	0.17
Category members	GO Category	GO:0003727	single-stranded RNA binding	Database	0
Category members	GO Category	GO:0043484	regulation of RNA splicing	Database	0