bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »
bioLOGIC Data

bioLOGIC Data


Exact search

Query: GNPDA1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
GNPDA1 0 1.081 -0.640 2.080

PTM Sites:

Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
GNPDA1 Ubiquitylation K50 -0.999 _YFTLGLPTGSTPLGCYK(gl)K_
GNPDA1 Ubiquitylation K51 -0.999 _YFTLGLPTGSTPLGCYK(gl)K_

Background Information for GNPDA1:





Protein-protein Interactions for GNPDA1

Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait FGL2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait GNPDA1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in GNPDA1

Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Glucosamine6P_isomerase IPR004547 0
Category members Glc/Gal-6P_isomerase IPR006148 0


Protein complexes (CORUM database) featuring GNPDA1

Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring GNPDA1

Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members GO Category GO:0016787 hydrolase activity Database 0.22
Category members GO Category GO:0005975 carbohydrate metabolic process Database 0.07
Category members Pathway Pathway_61 KEGG_AMINO_SUGAR_AND_NUCLEOTIDE_SUGAR_METABOLISM 0 0.04
Category members GO Category GO:0004342 glucosamine-6-phosphate deaminase activity Database 0
Category members GO Category GO:0006044 N-acetylglucosamine metabolic process Database 0
Category members GO Category GO:0006091 generation of precursor metabolites and energy Database 0
Category members GO Category GO:0007338 single fertilization Database 0


© Copyright Svejstrup Laboratory 2015