bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: GFM2

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
GFM2 0 -0.420 0.620 -0.320 0.779 -0.639 0.135 0.160

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
GFM2 Ubiquitylation K451 -0.855 _HTATGDTIVSSK(gl)SSALAAAR_
GFM2 Ubiquitylation K520 -0.898 _EDPSLK(gl)VR_

Background Information for GFM2:


Pubmed-GFM2 »
Uniprot-GFM2 »
Biogrid-GFM2 »
ProteomicsDB-GFM2 »

Tumorportal-GFM2 »
COSMIC-GFM2 »
GenomeRNAi-GFM2 »
Genecards-GFM2


Protein-protein Interactions for GFM2
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait CCT3 Cat. description Hein, Mann, Cell 2015
Category members IP bait BPNT1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait MRPL12 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait NDUFS7 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PSG8 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait RARS2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TRIM41 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TUFM Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait YBEY Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in GFM2
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members P-loop_NTPase IPR027417 2.83
Category members EF_GTP-bd_dom IPR000795 1.57
Category members Ribosomal_S5_D2-typ_fold IPR020568 1.06
Category members Small_GTP-bd_dom IPR005225 0.32
Category members Transl_B-barrel IPR009000 0.24
Category members Transl_elong_EFG/EF2_IV IPR005517 0.11
Category members EFG_V IPR000640 0
Category members Transl_elong_EFTu/EF1A_2 IPR004161 0
Category members EFG_III-V IPR009022 0


Protein complexes (CORUM database) featuring GFM2
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring GFM2
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005739 mitochondrion Database 1.67
Category members GO Category GO:0006184 GTP catabolic process Database 0.29
Category members GO Category GO:0005525 GTP binding Database 0.16
Category members GO Category GO:0003924 GTPase activity Database 0.16
Category members GO Category GO:0032543 mitochondrial translation Database 0.11
Category members GO Category GO:0032790 ribosome disassembly Database 0


.

© Copyright Svejstrup Laboratory 2015