bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: GDPD1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
GDPD1 1 2.943 -0.630 1.110

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
GDPD1 Ubiquitylation K304 0.581 -0.185 _AFDLGATGVMTDYPTK(gl)LR_
GDPD1 Ubiquitylation K162 -0.324 _VNNNVLIKK(gl)_
GDPD1 Ubiquitylation K129 2.018 -0.338 _ACQCEGK(gl)DNRIPLLK_
GDPD1 Ubiquitylation K105 -1.357 _ATGVNVNISDLK(gl)YCELPPYLGK_

Background Information for GDPD1:


Pubmed-GDPD1 »
Uniprot-GDPD1 »
Biogrid-GDPD1 »
ProteomicsDB-GDPD1 »

Tumorportal-GDPD1 »
COSMIC-GDPD1 »
GenomeRNAi-GDPD1 »
Genecards-GDPD1


Protein-protein Interactions for GDPD1
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait GDPD1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TSPAN5 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in GDPD1
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members PLC-like_Pdiesterase_TIM-brl IPR017946 0


Protein complexes (CORUM database) featuring GDPD1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring GDPD1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members GO Category GO:0016021 integral to membrane Database 7.67
Category members GO Category GO:0006071 glycerol metabolic process Database 0
Category members GO Category GO:0006629 lipid metabolic process Database 0
Category members GO Category GO:0008081 phosphoric diester hydrolase activity Database 0
Category members GO Category GO:0008889 glycerophosphodiester phosphodiesterase activity Database 0
Category members GO Category GO:0046872 metal ion binding Database 0


.

© Copyright Svejstrup Laboratory 2015