bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: GABPB1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
GABPB1 0 0.387 -0.410 0.300

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
GABPB1 Ubiquitylation K9 0.087 _K(gl)LLEAAR_

Background Information for GABPB1:


Pubmed-GABPB1 »
Uniprot-GABPB1 »
Biogrid-GABPB1 »
ProteomicsDB-GABPB1 »

Tumorportal-GABPB1 »
COSMIC-GABPB1 »
GenomeRNAi-GABPB1 »
Genecards-GABPB1


Protein-protein Interactions for GABPB1
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait CUL1 Cat. description Hein, Mann, Cell 2015
Category members IP bait GSTP1 Cat. description Hein, Mann, Cell 2015
Category members IP bait SHOC2 Cat. description Hein, Mann, Cell 2015
Category members IP bait SIDT2 Cat. description Hein, Mann, Cell 2015
Category members IP bait SUMO3 Cat. description Hein, Mann, Cell 2015
Category members IP bait GABPB1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in GABPB1
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Ankyrin_rpt IPR002110 0
Category members Ankyrin_rpt-contain_dom IPR020683 0


Protein complexes (CORUM database) featuring GABPB1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring GABPB1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0006351 transcription, DNA-templated Database 1.07
Category members GO Category GO:0003700 sequence-specific DNA binding transcription factor activity Database 0.63
Category members GO Category GO:0046982 protein heterodimerization activity Database 0.28
Category members GO Category GO:0006357 regulation of transcription from RNA polymerase II promoter Database 0.19
Category members GO Category GO:0045944 positive regulation of transcription from RNA polymerase II promoter Database 0.13
Category members GO Category GO:0044212 transcription regulatory region DNA binding Database 0


.

© Copyright Svejstrup Laboratory 2015